Index

A

aaggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acount() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acreate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) add() (lamindb.core.LabelManager method) add_feature_set() (lamindb.core.FeatureManager method) add_from() (lamindb.core.LabelManager method) add_new_from() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.core.SOMACurator method) add_new_from_columns() (lamindb.core.MuDataCurator method) add_new_from_var_index() (lamindb.core.AnnDataCurator method) (lamindb.core.MuDataCurator method) add_schema() (lamindb.core.FeatureManager method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.core.Schema method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) add_to_class() (lamindb.core.Registry method) add_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) adelete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.QuerySet method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) administered_datetime (clinicore.Treatment attribute) aearliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexplain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) afirst() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) age (clinicore.Patient attribute) (wetlab.Donor attribute) aget() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aget_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ain_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aiterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alast() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alatest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alias() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) all() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) anchor (lamindb.UPath property) anndata_file_pbmc68k_test() (in module lamindb.core.datasets)

anndata_human_immune_cells() (in module lamindb.core.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.core.datasets) anndata_pbmc3k_processed() (in module lamindb.core.datasets) anndata_pbmc68k_reduced() (in module lamindb.core.datasets) anndata_suo22_Visium10X() (in module lamindb.core.datasets) anndata_with_obs() (in module lamindb.core.datasets) AnnDataAccessor (class in lamindb.core.storage) AnnDataCurator (class in lamindb.core) annotate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) api_key (lamindb.setup.core.UserSettings attribute) append() (lamindb.Collection method) (lamindb.core.RecordList method) arefresh_from_db() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) args (lamindb.core.exceptions.DoesNotExist attribute) (lamindb.core.exceptions.IntegrityError attribute) (lamindb.core.exceptions.InvalidArgument attribute) (lamindb.core.exceptions.MissingContextUID attribute) (lamindb.core.exceptions.NotebookNotSaved attribute) (lamindb.core.exceptions.RecordNameChangeIntegrityError attribute) (lamindb.core.exceptions.UpdateContext attribute) (lamindb.core.exceptions.ValidationError attribute) array_rank (lamindb.Feature attribute) array_shape (lamindb.Feature attribute) array_size (lamindb.Feature attribute) Artifact (class in lamindb) artifact_if_hash_exists (lamindb.core.subsettings.CreationSettings attribute) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) ArtifactKind (in module lamindb.base.types) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Schema attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) as_manager() (lamindb.core.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) asave() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) aupdate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aupdate_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) authors (lamindb.Reference attribute) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.core.QueryManager attribute)

B

BackedAccessor (class in lamindb.core.storage) BaseCurator (class in lamindb.core) BasicRecord (class in lamindb.core) batch (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) (wetlab.Techsample attribute) BFXPipeline (class in bionty.base) Biologic (class in wetlab) BiologicType (in module wetlab) bionty module bionty.base module

bionty.core module BioRecord (class in bionty.core) BioSample (class in bionty.base) Biosample (class in clinicore) (class in wetlab) biosamples (wetlab.Techsample attribute) biotype (bionty.Gene attribute) birth_date (clinicore.Patient attribute) bmi (wetlab.Donor attribute) bulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) bulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method)

C

cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) CanCurate (class in lamindb.core) categoricals (lamindb.core.AnnDataCurator property) (lamindb.core.MuDataCurator property) (lamindb.core.SOMACurator property) cell_lines (wetlab.Biosample attribute) cell_types (clinicore.Biosample attribute) (wetlab.Biosample attribute) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) CellType (class in bionty) (class in bionty.base) check() (lamindb.core.QueryManager method) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (clinicore.Medication attribute) (wetlab.Compound attribute) children (lamindb.Project attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) clean() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) clean_fields() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) clean_up_failed_runs() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) clear() (lamindb.core.RecordList method) clinical_trial (clinicore.Biosample attribute) ClinicalTrial (class in clinicore) clinicore module close() (in module lamindb.setup) (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method)

cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) code (lamindb.core.exceptions.DoesNotExist attribute) (lamindb.core.exceptions.InvalidArgument attribute) (lamindb.core.exceptions.MissingContextUID attribute) (lamindb.core.exceptions.NotebookNotSaved attribute) (lamindb.core.exceptions.RecordNameChangeIntegrityError attribute) (lamindb.core.exceptions.UpdateContext attribute) (lamindb.core.exceptions.ValidationError attribute) Collection (class in lamindb) collections (clinicore.ClinicalTrial attribute) (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) column (wetlab.Well attribute) CombinationPerturbation (class in wetlab) complex_filter() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) components (lamindb.core.Schema attribute) composite (lamindb.core.Schema attribute) COMPOSITE (lamindb.core.storage.VALID_SUFFIXES attribute) Compound (class in wetlab) compound (wetlab.CompoundPerturbation attribute) compound_perturbations (wetlab.CombinationPerturbation attribute) CompoundPerturbation (class in wetlab) concentration (wetlab.CompoundPerturbation attribute) concentration_unit (wetlab.CompoundPerturbation attribute) connect() (in module lamindb) contains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.core.QueryManager method) copy() (lamindb.core.RecordList method) count() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordList method) create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.setup.migrate class method) create_relationship() (bionty.base.Ontology method) create_term() (bionty.base.Ontology method) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Schema attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) created_by_id (lamindb.core.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.core.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) CurateLookup (class in lamindb.core) Curator (class in lamindb) currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method)

D

data (lamindb.Run attribute) data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCurator (class in lamindb.core) date (lamindb.Reference attribute) (wetlab.Experiment attribute) date_error_message() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) dates() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) datetimes() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) db (lamindb.core.QueryManager property) (lamindb.core.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_manager() (lamindb.core.QueryManager method) deceased (clinicore.Patient attribute) deceased_date (clinicore.Patient attribute) deconstruct() (lamindb.core.QueryManager method) defer() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) defined_migrations() (lamindb.setup.migrate class method) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.QuerySet method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) deprecated() (in module lamindb.base) describe() (lamindb.Artifact method) (lamindb.Collection method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute)

DevelopmentalStage (class in bionty) (class in bionty.base) df (lamindb.core.InspectResult property) df() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.RecordList method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) df_iris() (in module lamindb.core.datasets) df_iris_in_meter() (in module lamindb.core.datasets) df_iris_in_meter_study1() (in module lamindb.core.datasets) df_iris_in_meter_study2() (in module lamindb.core.datasets) dialect (lamindb.setup.core.InstanceSettings property) diff() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) difference() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) dir_iris_images() (in module lamindb.core.datasets) dir_scrnaseq_cellranger() (in module lamindb.core.datasets) Disease (class in bionty) (class in bionty.base) diseases (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Donor attribute) display_available_sources() (in module bionty.base) display_currently_used_sources() (in module bionty.base) distinct() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) django() (in module lamindb.setup) doc_args() (in module lamindb.base) DoesNotExist (lamindb.User attribute) doi (lamindb.Reference attribute) Donor (class in wetlab) dosage (clinicore.Treatment attribute) dosage_unit (clinicore.Treatment attribute) download_to() (lamindb.UPath method) drive (lamindb.UPath property) Drug (class in bionty.base) dtype (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) dump() (bionty.base.Ontology method) dumps() (bionty.base.Ontology method) duration (clinicore.Treatment attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute)

E

earliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) email (lamindb.Person attribute) (lamindb.setup.core.UserSettings attribute) end_date (lamindb.Project attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) environment (lamindb.Run attribute) environmental_perturbations (wetlab.CombinationPerturbation attribute) EnvironmentalPerturbation (class in wetlab) Ethnicity (class in bionty) (class in bionty.base) ethnicity (clinicore.Patient attribute) (wetlab.Donor attribute)

exclude() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) exists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) Experiment (class in wetlab) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) extend() (lamindb.core.RecordList method) external (lamindb.Person attribute) extra() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method)

F

fake_bio_notebook_titles() (in module lamindb.core.datasets) Feature (class in lamindb) feature (lamindb.core.FeatureValue attribute) feature_sets (lamindb.Artifact property) (lamindb.core.Schema attribute) FeatureDtype (in module lamindb.base.types) FeatureManager (class in lamindb.core) features (lamindb.Artifact attribute) (lamindb.core.Schema attribute) (lamindb.Project attribute) FeatureSet (in module lamindb) FeatureValue (class in lamindb.core) FieldAttr (in module lamindb.base.types) (in module lamindb.core.fields) fields (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (lamindb.core.AnnDataCurator property) (lamindb.core.DataFrameCurator property) file_bam() (in module lamindb.core.datasets) file_fastq() (in module lamindb.core.datasets) file_fcs() (in module lamindb.core.datasets) file_fcs_alpert19() (in module lamindb.core.datasets) file_jpg_paradisi05() (in module lamindb.core.datasets) file_mini_csv() (in module lamindb.core.datasets) file_tiff_suo22() (in module lamindb.core.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.core.datasets) filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamManager class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method)

finish() (in module lamindb) (lamindb.core.Context method) finished_at (lamindb.Run attribute) first() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) frac_validated (lamindb.core.InspectResult property) from_anndata() (lamindb.Artifact class method) (lamindb.Curator class method) from_df() (lamindb.Artifact class method) (lamindb.core.Schema class method) (lamindb.Curator class method) (lamindb.Feature class method) from_dir() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) (lamindb.Curator class method) from_obo_library() (bionty.base.Ontology class method) from_queryset() (lamindb.core.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) from_spatialdata() (lamindb.Curator class method) from_tiledbsoma() (lamindb.Curator class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.CanCurate class method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) fs (lamindb.UPath property)

G

gender (clinicore.Patient attribute) GENDER_CHOICES (clinicore.Patient attribute) Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) genes (bionty.Pathway attribute) (wetlab.PerturbationTarget attribute) genetic_perturbations (wetlab.CombinationPerturbation attribute) GeneticPerturbation (class in wetlab) GeneticPerturbationSystem (in module wetlab) get() (bionty.base.Ontology method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.LabelManager method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) get_constraints() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

get_deferred_fields() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) get_gender_display() (clinicore.Patient method) get_label_weights() (lamindb.core.MappedCollection method) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) get_queryset() (lamindb.core.QueryManager method) get_relationship() (bionty.base.Ontology method) get_status_display() (clinicore.Treatment method) get_synonym_type() (bionty.base.Ontology method) get_term() (bionty.base.Ontology method) get_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method)

H

handle (lamindb.setup.core.UserSettings attribute) hardlink_to() (lamindb.UPath method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Schema attribute) (lamindb.Transform attribute)

HasParents (class in lamindb.core) home() (lamindb.UPath class method)

I

id (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings property) import_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) in_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) in_db (bionty.Source attribute) index() (lamindb.core.RecordList method) init() (in module lamindb.setup) initiated_by_run (lamindb.Run attribute) initiated_runs (lamindb.Run attribute) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) insert() (lamindb.core.RecordList method) inspect() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.CanCurate class method) (lamindb.core.QuerySet method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method)

InspectResult (class in lamindb.core) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.Storage attribute) InstanceSettings (class in lamindb.setup.core) instrument (bionty.ExperimentalFactor attribute) IntegrityError intersection() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_char_device() (lamindb.UPath method) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) is_type (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) IsVersioned (class in lamindb.core) items() (bionty.base.Ontology method) iterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) iterdir() (lamindb.UPath method) itype (lamindb.core.Schema attribute)

J

joinpath() (lamindb.UPath method)

joinuri() (lamindb.UPath method)

K

keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute)

key_to_filepath() (lamindb.setup.core.StorageSettings method) keys() (bionty.base.Ontology method) kind (lamindb.Artifact attribute)

L

LabelManager (class in lamindb.core) labels (lamindb.Artifact property) lamindb module lamindb.base module lamindb.base.types module lamindb.core module lamindb.core.datasets module lamindb.core.exceptions module lamindb.core.fields module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.integrations module lamindb.setup module lamindb.setup.core module last() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest_run (lamindb.Transform property) latest_version() (lamindb.core.QuerySet method) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ListLike (in module lamindb.base.types) load() (lamindb.Artifact method) (lamindb.Collection method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup) lookup() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.AnnDataCurator method) (lamindb.core.BasicRecord class method) (lamindb.core.DataFrameCurator method) (lamindb.core.FeatureValue class method) (lamindb.core.MuDataCurator method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.core.SOMACurator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method)

lstat() (lamindb.UPath method)

M

make_external() (lamindb.core.FeatureManager method) (lamindb.core.LabelManager method) map_legacy_ids() (bionty.base.Gene method) map_synonyms() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) mapped() (lamindb.Collection method) MappedCollection (class in lamindb.core) match() (lamindb.UPath method) maximal_set (lamindb.core.Schema attribute) md5 (bionty.Source attribute) measurement (bionty.ExperimentalFactor attribute) Medication (class in clinicore) medication (clinicore.Treatment attribute) medications (clinicore.Biosample attribute) members (lamindb.core.Schema property) (wetlab.CombinationPerturbation property) Meta (lamindb.core.BasicRecord attribute) (lamindb.core.IsVersioned attribute) (lamindb.core.TracksRun attribute) (lamindb.core.TracksUpdates attribute) (lamindb.User attribute)

meta_artifact (lamindb.Collection attribute) migrate (class in lamindb.setup) minimal_set (lamindb.core.Schema attribute) MissingContextUID mkdir() (lamindb.UPath method) modified (lamindb.UPath property) module bionty bionty.base bionty.core clinicore lamindb lamindb.base lamindb.base.types lamindb.core lamindb.core.datasets lamindb.core.exceptions lamindb.core.fields lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.integrations lamindb.setup lamindb.setup.core wetlab modules (lamindb.setup.core.InstanceSettings property) molecule (bionty.ExperimentalFactor attribute) mudata_papalexi21_subset() (in module lamindb.core.datasets) MuDataCurator (class in lamindb.core) MultipleObjectsReturned (lamindb.User attribute)

N

n (lamindb.core.Schema attribute) n_empty (lamindb.core.InspectResult property) n_files (lamindb.Artifact attribute) n_objects (lamindb.Artifact property) n_observations (lamindb.Artifact attribute) n_unique (lamindb.core.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Transform property) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute)

ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) non_validated (lamindb.core.AnnDataCurator property) (lamindb.core.DataFrameCurator property) (lamindb.core.InspectResult property) (lamindb.core.MuDataCurator property) (lamindb.core.SOMACurator property) none() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) NotebookNotSaved

O

objective (clinicore.ClinicalTrial attribute) objects (lamindb.User attribute) obs_names (lamindb.core.storage.AnnDataAccessor property) off_target_score (wetlab.GeneticPerturbation attribute) on_target_score (wetlab.GeneticPerturbation attribute) one() (lamindb.core.QuerySet method) (lamindb.core.RecordList method) one_or_none() (lamindb.core.QuerySet method) only() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Ontology (class in bionty.base) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.EnvironmentalPerturbation attribute) open() (lamindb.Artifact method) (lamindb.UPath method) order_by() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ordered (lamindb.core.QuerySet property) ordered_artifacts (lamindb.Collection property) ordered_set (lamindb.core.Schema attribute) organism (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.core.StaticReference property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute)

Organism (class in bionty) (class in bionty.base) organism (wetlab.Biosample attribute) (wetlab.Donor attribute) original_shapes (lamindb.core.MappedCollection property) otype (lamindb.Artifact attribute) (lamindb.core.Schema attribute) output_artifacts (lamindb.Run attribute) output_collections (lamindb.Run attribute) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method)

P

Param (class in lamindb) param (lamindb.core.ParamValue attribute) ParamManager (class in lamindb.core) params (lamindb.Artifact attribute) (lamindb.core.Schema attribute) (lamindb.Run attribute) ParamValue (class in lamindb.core) parent (lamindb.UPath property) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Project attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (wetlab.Compound attribute) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (wetlab.PerturbationTarget attribute) Patient (class in clinicore) patient (clinicore.Biosample attribute) Person (class in lamindb) persons (lamindb.Project attribute) PerturbationTarget (class in wetlab) Phenotype (class in bionty) (class in bionty.base) pk (lamindb.core.BasicRecord property) (lamindb.core.IsVersioned property) (lamindb.core.TracksRun property) (lamindb.core.TracksUpdates property) (lamindb.User property) pop() (lamindb.core.RecordList method) predecessors (lamindb.Transform attribute) prefetch_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) prepare_database_save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

private_django_api (lamindb.setup.core.SetupSettings property) Project (class in lamindb) projects (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Reference attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) Protein (class in bionty) (class in bionty.base) proteins (wetlab.Biologic attribute) (wetlab.PerturbationTarget attribute) protocol (lamindb.UPath property) proxy_dtype (lamindb.Feature attribute) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) (wetlab.Compound class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (lamindb.Reference attribute)

Q

query (lamindb.core.QuerySet property) query_children() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method)

query_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) QueryManager (class in lamindb.core) QuerySet (class in lamindb.core)

R

raw() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) Record (class in lamindb.core) record (lamindb.setup.core.StorageSettings property) RecordList (class in lamindb.core) RecordNameChangeIntegrityError records (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) Reference (class in lamindb) reference (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) references (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Transform attribute) refresh_from_db() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) Registry (class in lamindb.core) registry (lamindb.core.Schema property) relationships() (bionty.base.Ontology method) relative_to() (lamindb.UPath method) remove() (lamindb.core.RecordList method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.core.Schema method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

remove_values() (lamindb.core.FeatureManager method) rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) reset_sources() (in module bionty.base) resolve() (lamindb.UPath method) resolve_expression() (lamindb.core.QuerySet method) restore() (lamindb.Artifact method) (lamindb.Collection method) reverse() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordList method) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) route (clinicore.Treatment attribute) row (wetlab.Well attribute) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Run (class in lamindb) run (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.FeatureValue attribute) (lamindb.core.Schema attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) run_id (lamindb.core.TracksRun attribute) runs (lamindb.core.ParamValue attribute) (lamindb.Transform attribute)

S

samefile() (lamindb.UPath method) save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (in module lamindb) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.RecordList method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) save_artifact() (lamindb.core.AnnDataCurator method) (lamindb.core.BaseCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.core.SOMACurator method) (lamindb.Curator method) save_base() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) Schema (class in lamindb.core) schema (lamindb.Artifact attribute) (lamindb.setup.core.InstanceSettings property) schemas (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) schmidt22_crispra_gws_IFNG() (in module lamindb.core.datasets) schmidt22_perturbseq() (in module lamindb.core.datasets) scientific_name (bionty.Organism attribute) search() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) search_names (lamindb.core.subsettings.CreationSettings attribute) select_for_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) select_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) sequence (wetlab.GeneticPerturbation attribute) serializable_value() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.core.CanCurate method) (lamindb.core.Schema method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

set_as_currently_used() (bionty.Source method) set_latest_sources_as_currently_used() (in module bionty.core) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SetupSettings (class in lamindb.setup.core) sex (wetlab.Donor attribute) shape (lamindb.core.MappedCollection property) show() (lamindb.setup.migrate class method) SIMPLE (lamindb.core.storage.VALID_SUFFIXES attribute) site (clinicore.Treatment attribute) size (lamindb.Artifact attribute) slot (lamindb.core.Schema attribute) slug (lamindb.setup.core.InstanceSettings property) small_dataset1() (in module lamindb.core.datasets) small_dataset2() (in module lamindb.core.datasets) SOMACurator (class in lamindb.core) sort() (lamindb.core.RecordList method) source (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.core.StaticReference property) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (clinicore.Medication attribute) (wetlab.Compound attribute) source_code (lamindb.Transform attribute) source_website (bionty.Source attribute) space (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.Record attribute) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standardize() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.AnnDataCurator method) (lamindb.core.BaseCurator method) (lamindb.core.CanCurate class method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.core.QuerySet method) (lamindb.core.Schema class method) (lamindb.core.SOMACurator method) (lamindb.Curator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) start_date (lamindb.Project attribute) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) StaticReference (class in bionty.core) status (clinicore.Treatment attribute) STATUS_CHOICES (clinicore.Treatment attribute) stem (lamindb.UPath property) stem_uid (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.IsVersioned property) (lamindb.Transform property) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_local (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) storage_options (lamindb.UPath property) StorageSettings (class in lamindb.setup.core) StrField (in module lamindb.base.types) successors (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_all_sources_to_latest() (in module bionty.core) sync_git_repo (lamindb.core.Settings property) synchronize() (lamindb.UPath method) synonym_types() (bionty.base.Ontology method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Feature attribute) (wetlab.Biologic attribute) (wetlab.Compound attribute) synonyms_mapper (lamindb.core.InspectResult property) system (wetlab.GeneticPerturbation attribute)

T

targets (wetlab.Biologic attribute) (wetlab.CompoundPerturbation attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.GeneticPerturbation attribute) Techsample (class in wetlab) terms() (bionty.base.Ontology method) text (lamindb.Reference attribute) Tissue (class in bionty) (class in bionty.base) tissues (clinicore.Biosample attribute) (wetlab.Biosample attribute) title (clinicore.ClinicalTrial attribute) to_df() (bionty.base.Ontology method) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_pronto() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method)

to_url() (lamindb.UPath method) touch() (lamindb.UPath method) track() (in module lamindb) (lamindb.core.Context method) track_run_inputs (lamindb.core.Settings attribute) TracksRun (class in lamindb.core) TracksUpdates (class in lamindb.core) Transform (class in lamindb) transform (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.Run attribute) transforms (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) TransformType (in module lamindb.base.types) Treatment (class in clinicore) type (lamindb.Artifact property) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) type_is_cloud (lamindb.setup.core.StorageSettings property)

U

uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.Schema attribute) (lamindb.Feature attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) ULabel (class in lamindb) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Transform attribute) union() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unique_error_message() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) unit (lamindb.Feature attribute) (wetlab.EnvironmentalPerturbation attribute)

unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.base.types) update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) update_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Person attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biologic attribute) (wetlab.Biosample attribute) (wetlab.CombinationPerturbation attribute) (wetlab.Compound attribute) (wetlab.CompoundPerturbation attribute) (wetlab.Donor attribute) (wetlab.EnvironmentalPerturbation attribute) (wetlab.Experiment attribute) (wetlab.GeneticPerturbation attribute) (wetlab.PerturbationTarget attribute) (wetlab.Techsample attribute) (wetlab.Well attribute) upload_from() (lamindb.UPath method) url (bionty.Source attribute) (lamindb.Project attribute) (lamindb.Reference attribute) use_in_migrations (lamindb.core.QueryManager attribute) User (class in lamindb) user (lamindb.setup.core.SetupSettings property) UserSettings (class in lamindb.setup.core) using() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.BasicRecord class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.core.Schema class method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method)

V

VALID_SUFFIXES (class in lamindb.core.storage) validate() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (lamindb.core.AnnDataCurator method) (lamindb.core.BaseCurator method) (lamindb.core.CanCurate class method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.core.QuerySet method) (lamindb.core.Schema class method) (lamindb.core.SOMACurator method) (lamindb.Curator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.Person class method) (lamindb.Project class method) (lamindb.Reference class method) (lamindb.ULabel class method) (lamindb.User class method) (wetlab.Biologic class method) (wetlab.Biosample class method) (wetlab.CombinationPerturbation class method) (wetlab.Compound class method) (wetlab.CompoundPerturbation class method) (wetlab.Donor class method) (wetlab.EnvironmentalPerturbation class method) (wetlab.Experiment class method) (wetlab.GeneticPerturbation class method) (wetlab.PerturbationTarget class method) (wetlab.Techsample class method) (wetlab.Well class method) validate_constraints() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method) validate_unique() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.BasicRecord method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.Schema method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.Param method) (lamindb.Person method) (lamindb.Project method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (wetlab.Biologic method) (wetlab.Biosample method) (wetlab.CombinationPerturbation method) (wetlab.Compound method) (wetlab.CompoundPerturbation method) (wetlab.Donor method) (wetlab.EnvironmentalPerturbation method) (wetlab.Experiment method) (wetlab.GeneticPerturbation method) (wetlab.PerturbationTarget method) (wetlab.Techsample method) (wetlab.Well method)

validated (lamindb.core.InspectResult property) validated_by (lamindb.core.Schema attribute) validated_schemas (lamindb.core.Schema attribute) ValidateFields (class in lamindb.core) ValidationError value (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (wetlab.EnvironmentalPerturbation attribute) values (lamindb.Feature attribute) (lamindb.Param attribute) values() (bionty.base.Ontology method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) values_list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) var_index (lamindb.core.AnnDataCurator property) (lamindb.core.MuDataCurator property) (lamindb.core.SOMACurator property) var_names (lamindb.core.storage.AnnDataAccessor property) verbosity (lamindb.core.Settings property) version (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (bionty.Source attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Transform attribute) versions (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.IsVersioned property) (lamindb.Transform property) view() (in module lamindb) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) (wetlab.Compound method) view_tree() (lamindb.UPath method)

W

walk() (lamindb.UPath method) Well (class in wetlab) wetlab module with_name() (lamindb.UPath method)

with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)